# ------------------------------------------------ # CITATION.cff file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ # ------------------------------------------------ cff-version: 1.2.0 message: 'To cite package "ISPAT3D" in publications use:' type: software license: MIT title: 'ISPAT3D: Spatial Conditional Association Networks in Registered Tumor Volumes' version: 0.3.1 doi: 10.32614/CRAN.package.ISPAT3D abstract: Fits tumor-zone-specific conditional cell-density networks from registered three-dimensional multiplex imaging. An anisotropic Matern-3/2 Gaussian process is estimated per variable and zone using a Vecchia likelihood on spatially balanced anchors; predictions at all selected cells yield residual covariance sufficient statistics. Gaussian maximum likelihood then fits a shared-plus-zone factor covariance model. A matched section-wise planar fit uses the same selected cells and covariance estimator. This extends the spatially informed cell-density analysis of Bhadury et al. (2026) . authors: - family-names: Bhadury given-names: Sagnik email: bhadury@umich.edu repository: https://sagnikbhadury.r-universe.dev repository-code: https://github.com/sagnikbhadury/ISPAT-3D commit: 18626f049d2d27a4f52341b2c7d734f76b4393ae url: https://github.com/sagnikbhadury/ISPAT-3D date-released: '2026-09-16' contact: - family-names: Bhadury given-names: Sagnik email: bhadury@umich.edu